Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| BLCA | rs143508067 | chr8:50782859 | G/GT | 2.64E-5 | 215 | 10.6 | 8.72 | 1.87 | KM Plot |
| BLCA | rs144239472 | chr15:40954007 | G/C | 5.97E-5 | 213 | 10.6 | 6.47 | 4.55 | KM Plot |
| BLCA | rs145229294 | chr16:530658 | C/G | 2.21E-8 | 213 | 10.32 | 6.97 | 2.12 | KM Plot |
| BLCA | rs146660776 | chr8:50788235 | C/T | 2.42E-5 | 216 | 10.33 | 9.07 | 1.87 | KM Plot |
| BLCA | rs146873124 | chr1:103145425 | GA/G | 0 | 212 | 8.98 | 15.17 | 2.07 | KM Plot |
| BLCA | rs148089967 | chr15:40927751 | C/T | 4.13E-6 | 214 | 10.72 | 6.67 | 6.13 | KM Plot |
| BLCA | rs148296376 | chr8:50758294 | CA/C | 2.59E-5 | 215 | 10.33 | 9.25 | 1.87 | KM Plot |
| BLCA | rs148455383 | chr15:40984202 | TAA/T | 2.17E-6 | 215 | 10.68 | 6.97 | 6.13 | KM Plot |
| BLCA | rs1484815 | chr8:50798816 | G/A | 2.44E-5 | 216 | 10.13 | 9.25 | 1.87 | KM Plot |
| BLCA | rs148570921 | chr15:41014727 | AGTT/A | 1.99E-6 | 212 | 10.6 | 6.97 | 2.27 | KM Plot |
| BLCA | rs1485740 | chr8:25918153 | A/T | 6.24E-7 | 216 | 9.43 | 9.42 | 3.3 | KM Plot |
| BLCA | rs1486245 | chr8:50751425 | T/C | 2.01E-5 | 213 | 10.13 | 8.72 | 0.98 | KM Plot |
| BLCA | rs1488193 | chr3:112681585 | A/G | 1.71E-10 | 215 | 2.7 | 15.73 | 8.95 | KM Plot |
| BLCA | rs149057257 | chr18:5247940 | T/C | 1.02E-8 | 213 | 8.65 | 13.33 | 4.85 | KM Plot |
| BLCA | rs149244159 | chr16:527106 | TAGTC/T | 2.69E-8 | 211 | 10.53 | 6.68 | 2.12 | KM Plot |